1. Huang, HW, KG Ardlie and HT Yu. 2001. Frequencies and distribution of t-haplotype in the Southeast Asian house mouse (Mus musculus castaneus) in Taiwan. Molecular Ecology 10: 2349-2354.

2. Yu, HT and YH Peng. 2002. Population differentiation and gene flow revealed by microsatellite DNA markers in the house mouse (Mus musculus castaneus) in Taiwan. Zoological Science 19: 475-483

3. Yu, HT, YJ Lee, SW Huang and TS Chiu. 2002. Genetic analysis of the populations of Japanese anchovy (Engraulidae: Engraulis japonica) using microsatellite DNA. Marine Biotechnology 4: 471-479.

4. Floyd J, DGold, D Concepcion, T Poon, X Wang, E Keithley, D Chen, E Ward, RA Friedman, HT Yu, K Moriwaki, T Shiroishi, BA Hamilton. 2003. A natural allele of Nxf1/TAP suppresses retrovirus insertional mutations. Nature Genetics 28, 2003 : 1-8.

5. Huang, SW and HT Yu. 2003. Genetic variation of microsatellite loci in the major histocompatability complex (MHC) region in the Southeast Asian house mouse (Mus musculus castaneus). Genetica 119: 201-218.

6. Huang, SW, R Friedman, N Yu, AHT Yu and WH Li. 2005. How strong is the mutagenicity of recombination in mammals? Molecular Biology and Evolution 22: 426-431.

7. Liu, SYV, CF Dai, TY Fan and HT Yu 2005. Cloning and characterization of microsatellite loci in a gorgonian coral, Junceella juncea (Anthozoa; Octocorallia; Ellisellidae) and its application in clonal genotyping. Marine Biotechnology 7: 26-32.

8. Liu, SYV, HT Yu, TY Fan and CF Dai. 2005. Genotyping the clonal structure of a gorgonian coral, Juncella juncea (Anthozoa: Octocorallia), using microsatellite loci. Coral Reefs 24: 352-358.

9. Motokawa, M, HT Yu and M Harada. 2005. Diversification of the white-toothed shrews of the genus Crocidura (Insectivora: Soricidae) in East and Southeast Asia. Mammal Study 30: S53-S64.

10. Ma, GC, HS Tsao, HP Lu and HT Yu. 2006. AFLPs congruent with morphological differentiation of Asian common minnow Zacco in Taiwan (Pisces: Cyprinidae). Zoologica Scripta 35: 341-351.

11. Rompler, H, HT Yu, A Arnold, A Orth and T Schoneberg. 2006. Functional consequences of naturally occurring DRY motif variants in the mammalian chemoattracting receptor GPR33. Genomics 87: 724-732.

12. Wu, SY, YTK Lin and HT Yu. 2006. Population ecology of the southeastern Asian house mouse (Mus musculus castaneus) inhabiting rice granaries in Taiwan. Zoological Studies 45: 467-474.

13. Wu, SH, M Chen, SC Chin, DJ Lee, PY Wen, LW Chen, BT Wang and HT Yu. 2007. Cytogenetic analysis of the Formosan pangolin, Manis pentadactyla pentadactyla (Mammalia: Pholidota). Zoological Studies 46: 389-396.

14. Chen, YH, HT Yu and YC Kam. 2007. The ecology of parental care in an arboreal breeding frog, Chirixalus eiffingeri (Anura: Rhacophoridae) from Taiwan. Zoological Science 24: 434-440.

15. Jing, M, HT Yu, SH Wu, W Wang and X Zheng. 2007. Phylogenetic relationships in genus Niviventer (Rodentia: Muridae) in China inferred from complete mitochondrial cytochrome b gene. Molecular Phylogenetics and Evolution 44: 521-529.

16. Wang, PL, LH Lin, HT Yu, TW Cheng, SR Song, LW Kuo, EC Yeh, W Lin, and CY Wang. 2007. Cultivation-based characterization of microbial communities associated with deep sedimentary rocks from Taiwan Chelungpu drilling project cores. Terrestrial Atmospheric and Oceanic Sciences 18: 395-412.

17. Shiao, MS, P Khil, RD Camerini-Otero, T Shiroishi, K Moriwaki, HT Yu*, M Long*. 2007. Origins of new male germline functions from x-derived autosomal retrogenes in the mouse. Molecular Biology and Evolution 24: 2242-2253 (* corresponding authors).

18. Lai, YC, T Shiroishi, K Moriwaki, M Motokawa and HT Yu. 2008. Variation of coat color in house mice (Mus musculus) throughout Asia. Journal of Zoology 274: 270-276.

19. Shiao, MS, BY Liao, M Long, and HT Yu. 2008. Adaptive evolution of the insulin two-gene system in mouse. Genetics 178: 1683-1691.

20. You, EM, TS Chiu, KF Liu, A Tassanakajon, S Klinbunga, K Triwitayakorn, de la Pena Leobert , Y Li, HT Yu 2008. Microsatellite and mitochondrial haplotype diversity revealed population differentiation of the tiger shrimp (Penaeus monodon) in Indo-Pacific region. Animal Genetics 39: 267-277.

21. Geraldes, A, P Basset, B Gibson, KL Smith, B Harr, Hon-Tsen Yu, N Bulatova, Y Ziv, MW Nachman 2008 Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes. Molecular Ecology 17: 5349-5363.

22. You, EM, KF Liu, SW Huang, M Chen, SJ Fann, M Groumellec, HT Yu. 2010. Construction of integrated genetic linkage maps of the tiger shrimp (Penaeus monodon) using microsatellite and AFLP markers. Animal Genetics 41: 365-376.

23. Yu, HT, GC Ma, DJ Lee, SC Chin, HS Tsao, SH Wu, SY Shih, M Chen. 2010. Molecular delineation of the Y-borne sry gene in the Formosan pangolin (Manis pentadactyla pentadactyla) and its phylogenetic implications for Pholidota in extant mammals. Theriogenology (on line)